Function reference • Banksy

Neighborhood matrix computation
`computeBanksy()`	Compute the component neighborhood matrices for the BANKSY matrix.
`getBanksyMatrix()`	Builds the BANKSY matrix from neighborhood matrices.
Dimensionality reduction
`runBanksyPCA()`	Run PCA on a BANKSY matrix.
`runBanksyUMAP()`	Run UMAP on a BANKSY embedding.
Clustering
`clusterBanksy()`	Perform clustering in BANKSY's neighborhood-augmented feature space.
`connectClusters()`	Relabel cluster labels across parameter runs to maximise their similarity.
`compareClusters()`	Compare cluster outputs based on various clustering comparison measures.
`smoothLabels()`	k-Nearest neighbor cluster label smoothing.
`clusterNames()`	Get names of clustering runs.
Datasets
`hippocampus`	Mouse Hippocampus VeraFISH data
`rings`	An unrealistic simulation of spatially-resolved omics data.
Misc.
`simulateDataset()`	Simulate an unrealistic spatial omics dataset.

Reference