Implemented SmoothLabels for k-nearest neighbors cluster label smoothing
Parallel clustering for Leiden graph-based clustering
Version depedency on leidenAlg (>= 1.1.0) for compatibility with igraph (>= 1.5.0)
Seed setting for clustering
Neighborhood sampling for computing neighborhood feature matrices. See arguments sample_size, sample_renorm and seed in function ComputeBanksy
Version 0.1.4
Implemented Azimuthal Gabor filters in ComputeBanksy, with the number of harmonics determined by the M argument. To obtain similar results as version 0.1.3, use M=0
RunPCA and RunUMAP renamed to RunBanksyPCA and RunBanksyUMAP respectively to avoid namespace collisions with other packages
Changed some function argument names (e.g. spatialMode to spatial_mode)
Version 0.1.3
Interoperability with SingleCellExperiment with asBanksyObject
Passing Bioc and R CMD checks
Version 0.1.2
BanksyObject: dimensionality reduction slot name changed to reduction
RunPCA and RunUMAP
Plotting is generalised (plotReduction instead of plotUMAP / plotPCA)