Publications

1. RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells.
Chen KH, Boettiger AN, Moffitt JR, Wang S, Zhuang X.
Science. 2015 Apr 24;348(6233):aaa6090. Pubmed

2. Integrated spatial genomics reveals global architecture of single nuclei.
Takei Y, Yun J, Zheng S, Ollikainen N, Pierson N, White J, Shah S, Thomassie J, Suo S, Eng CL, Guttman M, Yuan GC, Cai L.
Nature. 2021 Feb;590(7845):344-350. Pubmed

3. Single-molecule imaging of transcription dynamics in somatic stem cells. Nature.
Wheat JC, Sella Y, Willcockson M, Skoultchi AI, Bergman A, Singer RH, Steidl U.
2020 Jul;583(7816):431-436. Pubmed

4. SABER amplifies FISH: enhanced multiplexed imaging of RNA and DNA in cells and tissues. Nat Methods.
Kishi JY, Lapan SW, Beliveau BJ, West ER, Zhu A, Sasaki HM, Saka SK, Wang Y, Cepko CL, Yin P.
2019 Jun;16(6):533-544. Pubmed

5. OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes.
Beliveau BJ, Kishi JY, Nir G, Sasaki HM, Saka SK, Nguyen SC, Wu CT, Yin P.
Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):E2183-E2192. Pubmed

6. High-performance multiplexed fluorescence in situ hybridization in culture and tissue with matrix imprinting and clearing.
Moffitt JR, Hao J, Bambah-Mukku D, Lu T, Dulac C, Zhuang X.
Proc Natl Acad Sci U S A. 2016 Dec 13;113(50):14456-14461. Pubmed

7. High-throughput single-cell gene-expression profiling with multiplexed error-robust fluorescence in situ hybridization.
Moffitt JR, Hao J, Wang G, Chen KH, Babcock HP, Zhuang X.
Proc Natl Acad Sci U S A. 2016 Sep 27;113(39):11046-51. Pubmed

8. Profiling T cell activation using single-molecule fluorescence in situ hybridization and flow cytometry.
Bushkin Y, Radford F, Pine R, Lardizabal A, Mangura BT, Gennaro ML, Tyagi S.
J Immunol. 2015 Jan 15;194(2):836-41. Pubmed